Publications Archives - KnetMiner

Our Publications

Selected Citations

Matthew Hutson (2020). Artificial-intelligence tools aim to tame the coronavirus literature. Nature.

Harrington et al. (2020). The Wheat GENIE3 Network Provides Biologically-Relevant Information in Polyploid Wheat. G3: GENES, GENOMES, GENETICS

Adamski et al. (2020). A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat. eLife.

Alabdullah et al. (2019). A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization. Frontiers in Plant Science.

Lyra et al. (2020). Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel. bioRxiv

Lab publications

Hassani-Pak K, Singh A, Brandizi M, Hearnshaw J, Phillips AL, Doonan JH and Rawlings C. (2020). KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species. bioRxiv

Brandizi M, Singh A, Rawlings C and Hassani-Pak K. (2018). Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner Use Case. SWAT4LS Paper Proceedings.

Singh A, Rawlings C and Hassani-Pak K. (2018). KnetMaps: a BioJS component to visualize biological knowledge networks. F1000 Research. Brandizi M, Singh A, Rawlings C and Hassani-Pak K. (2018). Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach. Journal of Integrative Bioinformatics.

Hassani-Pak K and Rawlings C. (2017). Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. Journal of Integrative Bioinformatics.

Hassani-Pak K, Castellote M, Esch M, Hindle M, Lysenko A, Taubert J and Rawlings C. (2016). Developing integrated crop knowledge networks to advance candidate gene discovery. Applied & Translational Genomics.

Taubert J, Hassani-Pak K, Castells-Brooke N and Rawlings C. (2014). Ondex Web: web-based visualization and exploration of heterogeneous biological networks. Bioinformatics.

Lysenko A, Defoin-Platel M, Hassani-Pak K, Taubert J, Hodgman C, Rawlings C and Saqi M. (2011). Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics.

Hassani-Pak et al. (2010). Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response. Journal of Integrative Bioinformatics.

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